methylphase documentation

Welcome to the methylphase docs.

NOTE: This documentation is still under development. If any information is missing, unclear or incorrect, please open an issue on the GitHub repository.

Contents

• Overview
• Installation
• Quickstart
• Usage guides:
  • Phase variants pipeline
  • Extract methylation calls
  • Split reads
  • Typing utilities
  • Utility commands
• Example analysis
• FAQ and troubleshooting